PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03049.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GATA

Protein Properties

Length: 544aa MW: 60648.5 Da PI: 7.5009

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03049.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.6	9.9e-15	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Dr03049.1 7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 99************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLLNYTPMHA RELIPDSEEF 60 KAARVNKSVS FKPKEQKLPK KKLMNASSEI GHEMQCCDQN FKKIREEDPS NRSSSGSAIS 120 FSESCAHFGT ADASDLTAQS IVWDSLVPSR KRTWVARPKP SPVEKLTKDL YSIWHEQSFC 180 LSASSEEDLL LENETLFGSD EIGHGGLLIR HPNSKTLDEE SEASSIPTDN KSCIHSETFS 240 GSTSFPVHGE SRVIGSSHAK PTTQMLLGHA TRDKSSDEML QFIRNRDSPL SSSNLKDVFN 300 FEVFMAHLTQ EERQKLMNLE KMFSSSQFIE NFSYYQQLLX EGVFDLSLLG VKADECRTLK 360 RLVLLNLNKT KWVENRKELQ EIQHKTRGKE TINTPSVVAN SSLTPLKRLC DSANQKSRDT 420 NGVMRSPKRI SKAGVVNVAS AKPPNRNNND TNSKAVSYID EFVDNEVDCF SPRSLFASPS 480 TPIQFSAISS EQDLLFDVPS NGPTPEAELL YHPWKMKTTM NGIAEGEDXX SNFPASSIIS 540 GQKR

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLLNYTPMHA RELIPDSEEF  60
KAARVNKSVS FKPKEQKLPK KKLMNASSEI GHEMQCCDQN FKKIREEDPS NRSSSGSAIS  120
FSESCAHFGT ADASDLTAQS IVWDSLVPSR KRTWVARPKP SPVEKLTKDL YSIWHEQSFC  180
LSASSEEDLL LENETLFGSD EIGHGGLLIR HPNSKTLDEE SEASSIPTDN KSCIHSETFS  240
GSTSFPVHGE SRVIGSSHAK PTTQMLLGHA TRDKSSDEML QFIRNRDSPL SSSNLKDVFN  300
FEVFMAHLTQ EERQKLMNLE KMFSSSQFIE NFSYYQQLLX EGVFDLSLLG VKADECRTLK  360
RLVLLNLNKT KWVENRKELQ EIQHKTRGKE TINTPSVVAN SSLTPLKRLC DSANQKSRDT  420
NGVMRSPKRI SKAGVVNVAS AKPPNRNNND TNSKAVSYID EFVDNEVDCF SPRSLFASPS  480
TPIQFSAISS EQDLLFDVPS NGPTPEAELL YHPWKMKTTM NGIAEGEDXX SNFPASSIIS  540
GQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-94	GATA family protein

Link Out ? help Back to Top
Ensembl	Dr03049.1