PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LSD | ||||||||
Protein Properties | Length: 208aa MW: 22301.4 Da PI: 8.3247 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.1 | 5.2e-12 | 92 | 115 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr+lL YP GA+sV+Ca+C Dr03002.1 92 CSGCRNLLLYPVGATSVCCAVCSV 115 **********************76 PP | |||||||
2 | zf-LSD1 | 43 | 7.6e-14 | 131 | 155 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA++V+C++C+tV Dr03002.1 131 CGGCHTLLMYVRGATNVQCSCCHTV 155 ************************9 PP | |||||||
3 | zf-LSD1 | 41.1 | 2.9e-13 | 169 | 193 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Dr03002.1 169 CGNCRMLLMYQYGARSVKCAVCNFV 193 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MVVYVAVRKL LGLLHVDGGS SMKEALKMMR MHGARVLETV PLFSFSFFSL LDSSPLKQLL 60 IYLQAMPVPL APYPTPPVPF IQPNGNQSHL VCSGCRNLLL YPVGATSVCC AVCSVITSVP 120 PPGTEMAQLV CGGCHTLLMY VRGATNVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY 180 GARSVKCAVC NFVTSIGAFP STEQKVGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-74 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr03002.1 |