PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr02415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20631.6 Da PI: 6.2222 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 34 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+lapyfp ++p kf +h++FGasn++kll++lpe++r da++s+vyeA+ar+rdPvyG++gvi +lq++++ l+a+la++++e Dr02415.1 34 PCAACKILRRRCADKCILAPYFPPTDPLKFTTAHRVFGASNIIKLLQELPESQRADAVTSMVYEAKARIRDPVYGCAGVICHLQREVSDLQAQLAKAQAE 133 7***********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MDSNETMTTF YNPSSSSSPS PATSPPPPPV IQSPCAACKI LRRRCADKCI LAPYFPPTDP 60 LKFTTAHRVF GASNIIKLLQ ELPESQRADA VTSMVYEAKA RIRDPVYGCA GVICHLQREV 120 SDLQAQLAKA QAEIISMQGH QANLIALVCM EMDKHKQPLI HNSINLDHQS FEDDPYCFLD 180 DISLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-69 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr02415.1 |