PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02355.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 879aa MW: 97540.3 Da PI: 7.857

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02355.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.2	1.3e-17	296	395	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F +++ e++lv+++ Dr02355.1 296 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDAKGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFNRID-PEGKLVMGF 393 99************************555567778***********99899999999.*******************987.777777776 PP E- CS B3 97 fr 98 ++ Dr02355.1 394 RK 395 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MVRLETKKRC MNTACGAAAS DGEWLKGWGL RSGGFADLCG KCGLAFEQLL FCDIFHEKES 60 GWRECKFCCK RLHCGCIASN ASLDLLDCGG VQCNSCLKNS NISPTPGHVV QCPLPSSLSM 120 LLDYPIRGKK DEKVNDFVMS IAEATSHVGD AGSSHASSKS QIPVVSFHNS RQGDGRLSIN 180 MRTSNFGNTL TNCNSGNQPS VLLLPNTATE GREHNKALSA FEQMQMLHHH LGRLPKTSNA 240 VASEVSKDML PYVHVTRSPS QGQGRNQMLP RYWPRISDIE LQQISGDSKS KILPLFEKVL 300 SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLRIQDAKG KDWVFQFRFW PNNNSRMYVL 360 EGVTPCIQSL QLQAGDTVTF NRIDPEGKLV MGFRKAIHNT SLEASAYSMM IILCHSGFVC 420 VVFLLRIAGF VGLNTQIILL KQNSQVSAID HGAIGNEPYS AGVTVNPVNL SGYFGLLPSL 480 TGTTVPQLST FPEHLSSAGA NIGCHKIGTL GQESNESLSL KPSLAQDMKR SLSIGSKGKR 540 LLMDNEYAME LKLTWEEAQD MLRPPPSLKP SIVEIEDHEF EEYKYDLTGS KHSDVIDLKR 600 TWTHHPNFSI TAVRGKDWLR IYKIREIGSH RRWTHHSNFS ITAVRGKDWL RIYKAREIGS 660 HRELDQWVQC DDCLKWHRLP LDVLLSSNWT CADNTWDLKR ASCYAPDEVG SRELQNMLQL 720 NAEFYSDLRG STAGSISENA LPELEASGLG DVSTAAVIDD DNVSNCIIAT TTRHPRHRPG 780 CTCIVCIQPP SGKGPKHKPT CMCNVCMTVK RRFKTLMMRK KKRQSEYEES VAMKKLAWGC 840 EDEMESDSSL KTRHLQDPAP ETELASGSDN SITEKLEMS

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MVRLETKKRC MNTACGAAAS DGEWLKGWGL RSGGFADLCG KCGLAFEQLL FCDIFHEKES  60
GWRECKFCCK RLHCGCIASN ASLDLLDCGG VQCNSCLKNS NISPTPGHVV QCPLPSSLSM  120
LLDYPIRGKK DEKVNDFVMS IAEATSHVGD AGSSHASSKS QIPVVSFHNS RQGDGRLSIN  180
MRTSNFGNTL TNCNSGNQPS VLLLPNTATE GREHNKALSA FEQMQMLHHH LGRLPKTSNA  240
VASEVSKDML PYVHVTRSPS QGQGRNQMLP RYWPRISDIE LQQISGDSKS KILPLFEKVL  300
SASDAGRIGR LVLPKACAEA YFPPISQPEG LPLRIQDAKG KDWVFQFRFW PNNNSRMYVL  360
EGVTPCIQSL QLQAGDTVTF NRIDPEGKLV MGFRKAIHNT SLEASAYSMM IILCHSGFVC  420
VVFLLRIAGF VGLNTQIILL KQNSQVSAID HGAIGNEPYS AGVTVNPVNL SGYFGLLPSL  480
TGTTVPQLST FPEHLSSAGA NIGCHKIGTL GQESNESLSL KPSLAQDMKR SLSIGSKGKR  540
LLMDNEYAME LKLTWEEAQD MLRPPPSLKP SIVEIEDHEF EEYKYDLTGS KHSDVIDLKR  600
TWTHHPNFSI TAVRGKDWLR IYKIREIGSH RRWTHHSNFS ITAVRGKDWL RIYKAREIGS  660
HRELDQWVQC DDCLKWHRLP LDVLLSSNWT CADNTWDLKR ASCYAPDEVG SRELQNMLQL  720
NAEFYSDLRG STAGSISENA LPELEASGLG DVSTAAVIDD DNVSNCIIAT TTRHPRHRPG  780
CTCIVCIQPP SGKGPKHKPT CMCNVCMTVK RRFKTLMMRK KKRQSEYEES VAMKKLAWGC  840
EDEMESDSSL KTRHLQDPAP ETELASGSDN SITEKLEMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	810	821	KRRFKTLMMRKK
2	810	823	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-176	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr02355.1