PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02300.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARF

Protein Properties

Length: 667aa MW: 74762.6 Da PI: 7.2097

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.3	1.7e-24	116	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ k++ae++ +++ +tl+ +d++ +W++++iyr++++r++lt+GW+ Fv a++L +gD ++F +++++el+ Dr02300.1 116 FCKILTASDTSTHGGFSILKRHAEKClppldmsQQP--PVQTLVAKDLHDVEWTFRHIYRGQPKRHLLTTGWSTFVCAKKLVAGDAFIFL--RDENGELR 211 99***************************64434..4459*********************************************..5699999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ Dr02300.1 212 VGVRRA 217 ***996 PP
2	Auxin_resp	88	1.8e-29	242	323	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++++ +F+ +Y Pr ++eF ++++++++++k+++ +GmRf+m+fe+++ +e rl+Gt+vg +d++p++W +S+Wr+Lk Dr02300.1 242 ASHAITSGAMFTLYYWPRR-SPEFLIPYDRYMESVKIEYPIGMRFQMKFEGDEGQEERLTGTIVGKEDSEPMSWLDSQWRCLK 323 689*************7.89*********************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MCPLALDGND IHTENWRLCA GPNVSIPSAG DRVFYFPQGH IEQVEAYANQ DSNRPMPSHG 60 LPSKILCRVV NVQLKAERDT DEVFAQVSLV PEHEQENTAV FATQEPTGLN PRVYSFCKIL 120 TASDTSTHGG FSILKRHAEK CLPPLDMSQQ PPVQTLVAKD LHDVEWTFRH IYRGQPKRHL 180 LTTGWSTFVC AKKLVAGDAF IFLRDENGEL RVGVRRAMKK PGNSSASVIS GQSMRLGVLA 240 SASHAITSGA MFTLYYWPRR SPEFLIPYDR YMESVKIEYP IGMRFQMKFE GDEGQEERLT 300 GTIVGKEDSE PMSWLDSQWR CLKIQWDGTL TAMHPERISP WQIIPFTSAD VHPLVNSRSK 360 RVRNAYYRTP PQGPLNAPVY PIPRYSGVLQ GQENMAQGQR SGCVIVEQPN LRELSTPGYL 420 PPHTNKAEGN HNVVDYTKPM ELENLSFPLR PKFSAAETSY RNPGSKTFDN PSLDSYWHFD 480 KQNAERSLNE TNAGTINNSG KQSMCKIFGV LIKGSTSTMS PNIVTSVPPQ DVAPVAQPKV 540 ATYDIDQLSE PSKSTRPTES GCSASLNEQS SSAQLFQARS CTKVHKQGSA LGRSVDLSRF 600 EGYEELKKEL DRMFEFNGAL IDQSKGWKII YTDDEGDIMI AFCSMVRRIY IYTQEEVEKL 660 KPGMLNG

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MCPLALDGND IHTENWRLCA GPNVSIPSAG DRVFYFPQGH IEQVEAYANQ DSNRPMPSHG  60
LPSKILCRVV NVQLKAERDT DEVFAQVSLV PEHEQENTAV FATQEPTGLN PRVYSFCKIL  120
TASDTSTHGG FSILKRHAEK CLPPLDMSQQ PPVQTLVAKD LHDVEWTFRH IYRGQPKRHL  180
LTTGWSTFVC AKKLVAGDAF IFLRDENGEL RVGVRRAMKK PGNSSASVIS GQSMRLGVLA  240
SASHAITSGA MFTLYYWPRR SPEFLIPYDR YMESVKIEYP IGMRFQMKFE GDEGQEERLT  300
GTIVGKEDSE PMSWLDSQWR CLKIQWDGTL TAMHPERISP WQIIPFTSAD VHPLVNSRSK  360
RVRNAYYRTP PQGPLNAPVY PIPRYSGVLQ GQENMAQGQR SGCVIVEQPN LRELSTPGYL  420
PPHTNKAEGN HNVVDYTKPM ELENLSFPLR PKFSAAETSY RNPGSKTFDN PSLDSYWHFD  480
KQNAERSLNE TNAGTINNSG KQSMCKIFGV LIKGSTSTMS PNIVTSVPPQ DVAPVAQPKV  540
ATYDIDQLSE PSKSTRPTES GCSASLNEQS SSAQLFQARS CTKVHKQGSA LGRSVDLSRF  600
EGYEELKKEL DRMFEFNGAL IDQSKGWKII YTDDEGDIMI AFCSMVRRIY IYTQEEVEKL  660
KPGMLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.1	1e-179	ARF family protein

Link Out ? help Back to Top
Ensembl	Dr02300.1