PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02220.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 878aa MW: 97636.8 Da PI: 8.1697

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.5	3.2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+g+lKKA+EL vLCda+ ++ifs++gkl+ey+s Dr02220.1 9 KRIENTTNRQVTFSKRRQGLLKKAHELAVLCDAQLGLVIFSHSGKLFEYCS 59 79***********************************************96 PP
2	K-box	66.3	1.1e-22	71	168	1	97
K-box 1 yqkssgksleeakae.slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 yqk+++ + eea ++ + e++kL++e+++Lq R+++GedL+ L+ +L qLe+qLe s++k+R++K++ll++q+e+l++k e+q + + +++ Dr02220.1 71 YQKATNIRIEEAGSQhQILCEISKLRNENDKLQAGMRQYMGEDLTALTAHDLDQLEEQLEYSVNKVRARKHQLLHQQLENLRRKLVEQQAAMEHQHQQ 168 566666664444333045679***************************************************************99999877766665 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MGRGKIEIKR IENTTNRQVT FSKRRQGLLK KAHELAVLCD AQLGLVIFSH SGKLFEYCSP 60 SSSMRQIIDR YQKATNIRIE EAGSQHQILC EISKLRNEND KLQAGMRQYM GEDLTALTAH 120 DLDQLEEQLE YSVNKVRARK HQLLHQQLEN LRRKLVEQQA AMEHQHQQAA AAAEAEQKIS 180 EIPVLEFPHF YHDEASRTFL QLSPQLHPFR LQPTQPNLQD TSFGGHGLQL CVGGVLRGVM 240 VRRHGCELPV NVFQVVAITV FFLLVIAFYA FFAPFLGKSF FEYAAISAYT PVAIAVFILY 300 IRCTRINPAD PGIMGKFEDX LNDISNANFN LDLQKLNKPE NFNNVGGGML SSPSSTCSHS 360 LDDXXKRVSV GDDRKIYLXV THQRKSSLTC CNLGGLVCLI FAKDDCRKEE ASEQNADAED 420 VLFCTLCNAE VRKFSKHCKS CDKCVDGFDH HCRWLNNCVG RKNYFTFISL MVMSVVWLLI 480 EFGLGIAVLV LCFVNKTNTE KSITEKLGNG FSHALFVTIV AICTALSLLT CAPLGELLFF 540 HMILIRKGIT TYEYVVAMRA MSEAAPAILD DEFQEGALYS PTNSATTTRS GGSSLSLQYK 600 GVWCTPPRVF VDQLDEIIPH LEPGMIPSTI DPDSAVNAEN RNKSKKAVKI SAWKLAKLDS 660 NEAMRAAANA RASSSVLRPV EXXRTPEADC GFSGNASIRS STSTDYRTTK ELKTKKKPSP 720 LASKEDFESV TSTATASCLS SPIHIHEPVA LNLLPLHRSL PSTELSRDGR RPLVVWDQEA 780 GRYISSIPAC SRAETSIQGP SRNSHIPSLK NPSAETSNHG RRPNVPSSSV AAPVLQPDRF 840 LYXEQSIFFG GPILNVRPGD ITRRNDGNSR LTRNQEGM

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MGRGKIEIKR IENTTNRQVT FSKRRQGLLK KAHELAVLCD AQLGLVIFSH SGKLFEYCSP  60
SSSMRQIIDR YQKATNIRIE EAGSQHQILC EISKLRNEND KLQAGMRQYM GEDLTALTAH  120
DLDQLEEQLE YSVNKVRARK HQLLHQQLEN LRRKLVEQQA AMEHQHQQAA AAAEAEQKIS  180
EIPVLEFPHF YHDEASRTFL QLSPQLHPFR LQPTQPNLQD TSFGGHGLQL CVGGVLRGVM  240
VRRHGCELPV NVFQVVAITV FFLLVIAFYA FFAPFLGKSF FEYAAISAYT PVAIAVFILY  300
IRCTRINPAD PGIMGKFEDX LNDISNANFN LDLQKLNKPE NFNNVGGGML SSPSSTCSHS  360
LDDXXKRVSV GDDRKIYLXV THQRKSSLTC CNLGGLVCLI FAKDDCRKEE ASEQNADAED  420
VLFCTLCNAE VRKFSKHCKS CDKCVDGFDH HCRWLNNCVG RKNYFTFISL MVMSVVWLLI  480
EFGLGIAVLV LCFVNKTNTE KSITEKLGNG FSHALFVTIV AICTALSLLT CAPLGELLFF  540
HMILIRKGIT TYEYVVAMRA MSEAAPAILD DEFQEGALYS PTNSATTTRS GGSSLSLQYK  600
GVWCTPPRVF VDQLDEIIPH LEPGMIPSTI DPDSAVNAEN RNKSKKAVKI SAWKLAKLDS  660
NEAMRAAANA RASSSVLRPV EXXRTPEADC GFSGNASIRS STSTDYRTTK ELKTKKKPSP  720
LASKEDFESV TSTATASCLS SPIHIHEPVA LNLLPLHRSL PSTELSRDGR RPLVVWDQEA  780
GRYISSIPAC SRAETSIQGP SRNSHIPSLK NPSAETSNHG RRPNVPSSSV AAPVLQPDRF  840
LYXEQSIFFG GPILNVRPGD ITRRNDGNSR LTRNQEGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	4e-45	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr02220.1