PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02191.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 275aa MW: 31551.3 Da PI: 7.4112

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02191.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.6	2.1e-25	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g+lKKA+EL +LCda+v +i+fs +gkl+ey+s Dr02191.1 9 KKIDNATARQVTFSKRRRGLLKKAQELAILCDADVGLIVFSASGKLFEYAS 59 68***********************************************86 PP
2	K-box	53.3	1.2e-18	91	172	19	100
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +a Lkke++ r++R++ GedL++L+l+eL++Le+ ++ +l+ + ++K ++eq++ lq+ke +l eenk+L++k+ee Dr02191.1 91 SRYAGLKKEYDDKNRQLRQMRGEDLQELTLEELMHLERTIDIGLTCVLERKGLQIMEQLSSLQQKEMQLLEENKRLKEKVEE 172 56889**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MTREKIKIKK IDNATARQVT FSKRRRGLLK KAQELAILCD ADVGLIVFSA SGKLFEYASL 60 SMCEILRKHS MQLDNTLKQG NQTVDSLTGN SRYAGLKKEY DDKNRQLRQM RGEDLQELTL 120 EELMHLERTI DIGLTCVLER KGLQIMEQLS SLQQKEMQLL EENKRLKEKV EEMRMVEKQP 180 LINQDQVNGF HEDGQCSSVL VPQDCDHTSD TLLKLGLNLD EDEIKFSNNI STSQTKIIKE 240 DQTWVKFGKK IGRSSVTIFG EMVARDLVGT PLEKW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-61	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr02191.1