PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02190.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 288aa MW: 32197 Da PI: 7.3436

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.2	7.1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeEL +LCda+v +iifs +gkl+ey+s Dr02190.1 9 KKIDNATARQVTFSKRRRGLFKKAEELAILCDADVGLIIFSASGKLFEYAS 59 68***********************************************86 PP
2	SRF-TF	41.8	1.3e-13	203	236	18	51
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeyss 51 g++KK +EL +LCda v +iifs +gkl+ey+s Dr02190.1 203 RGLFKKSQELAILCDAGVGLIIFSASGKLFEYAS 236 59******************************86 PP
3	K-box	47.9	5.8e-17	85	161	22	98
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 a Lkke+ r++R++ Ge+L++L+l+eL++Le+ ++ +l+++ ++K +++q++ lq+ke +l e+nk+Lr+k+ Dr02190.1 85 AGLKKEYADKNRQLRQMRGENLQELTLEELMHLERTIDIGLTRVMERKGLQIMKQLSSLQQKEMQLLEDNKRLREKM 161 56899999999***************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence
MAREKIKIKK IDNATARQVT FSKRRRGLFK KAEELAILCD ADVGLIIFSA SGKLFEYASS 60 STQFDAAQKP DQQTLDLLTD NSAQAGLKKE YADKNRQLRQ MRGENLQELT LEELMHLERT 120 IDIGLTRVME RKGLQIMKQL SSLQQKEMQL LEDNKRLREK MGLCMIDHAS VSGLHEDGQY 180 SSESIDTSDT LLRLGDACLL MSRGLFKKSQ ELAILCDAGV GLIIFSASGK LFEYASSSKG 240 KDEDEDKEDR QRNSAGELGL FKKAQELVIY GGWCVGLVVF LTSGKLAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-65	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr02190.1