PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01458.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GATA

Protein Properties

Length: 857aa MW: 97086.2 Da PI: 8.1074

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01458.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.2	5.4e-19	730	763	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + Dr01458.1 730 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 763 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MFLPHANQIS PMLLSSWQDN SIISARDVAV KEIFSLSPEE PKNDKLMREY DTLVRGITSI 60 PWNIPGTQYQ RALEEEHLQV AKLKNIKGEI SLTWDDYNLQ DNGVHKVFLK NNEKSKDEAN 120 KLPPGYIGLP FIGETFAFMK PHSPTILGEF MDHHIARFGK IFTAKVLGTK TVISADVELN 180 RFILKNDKKI FEEGWPSSFA TLIGKKSISM LAGDDHKRLR SIIFNFLNGD RLRTAFLDDA 240 EQVMSFLLSS WNDGPIISAK DEAMKRKVEE RKRINGDENL RMERDDLLNW LMKNTTNGFE 300 EIGDTLLHTL FGGHDTTSRA ICLLLYFLDG CPKAIQQLRE EHLQVVKIKE DRGESNKLNW 360 DDFKAMEFTK CVINETLRLG NIAGFLHKKA RTEIEFKGYV IPQGCTVITH LSAXHLDPNL 420 FENPNHFDPW RWMGLISDVY KMKNFMPFGG GPRQCPGAEL ARMEMMVFVH HLLLNYSWEL 480 AEPDHPITLP FIEFPKAALS SAVFVLEAEE DEKALNFREM SPPPPSQKPQ FAPRKPRKGK 540 SKKQXDEGPK ASSSNAIPPP PEKPLPAPPS ILFPRYSPLT STPLPPPSMP RKRFLRRVLP 600 FLLAATAGGD QDQSDDSVLI NANTSPFPCD IFFNNLRQEG TNDCHDQQEL SHHGLSYESK 660 TVEEGSLRFG EVGENLNERS DKWLFMKKMM SSEKIILKTR RRRKTRELED QQQLNQQNSN 720 NAQTGSIRFC SDCNTTKTPL WRSGPQGPKS LCNACGIRQR KARRAMAAAA ETGAGFINVD 780 KLNEVGKEKG SDXDHSTVPF KKRCKFNNTE PTQKNVCLDN VMISLSKNSG FMNPPPQQDE 840 RDAAILLMSL SCNLVSS

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MFLPHANQIS PMLLSSWQDN SIISARDVAV KEIFSLSPEE PKNDKLMREY DTLVRGITSI  60
PWNIPGTQYQ RALEEEHLQV AKLKNIKGEI SLTWDDYNLQ DNGVHKVFLK NNEKSKDEAN  120
KLPPGYIGLP FIGETFAFMK PHSPTILGEF MDHHIARFGK IFTAKVLGTK TVISADVELN  180
RFILKNDKKI FEEGWPSSFA TLIGKKSISM LAGDDHKRLR SIIFNFLNGD RLRTAFLDDA  240
EQVMSFLLSS WNDGPIISAK DEAMKRKVEE RKRINGDENL RMERDDLLNW LMKNTTNGFE  300
EIGDTLLHTL FGGHDTTSRA ICLLLYFLDG CPKAIQQLRE EHLQVVKIKE DRGESNKLNW  360
DDFKAMEFTK CVINETLRLG NIAGFLHKKA RTEIEFKGYV IPQGCTVITH LSAXHLDPNL  420
FENPNHFDPW RWMGLISDVY KMKNFMPFGG GPRQCPGAEL ARMEMMVFVH HLLLNYSWEL  480
AEPDHPITLP FIEFPKAALS SAVFVLEAEE DEKALNFREM SPPPPSQKPQ FAPRKPRKGK  540
SKKQXDEGPK ASSSNAIPPP PEKPLPAPPS ILFPRYSPLT STPLPPPSMP RKRFLRRVLP  600
FLLAATAGGD QDQSDDSVLI NANTSPFPCD IFFNNLRQEG TNDCHDQQEL SHHGLSYESK  660
TVEEGSLRFG EVGENLNERS DKWLFMKKMM SSEKIILKTR RRRKTRELED QQQLNQQNSN  720
NAQTGSIRFC SDCNTTKTPL WRSGPQGPKS LCNACGIRQR KARRAMAAAA ETGAGFINVD  780
KLNEVGKEKG SDXDHSTVPF KKRCKFNNTE PTQKNVCLDN VMISLSKNSG FMNPPPQQDE  840
RDAAILLMSL SCNLVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	3e-15	GATA family protein

Link Out ? help Back to Top
Ensembl	Dr01458.1