PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr01113.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 397aa    MW: 43369.4 Da    PI: 8.5584
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr01113.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.81.9e-15288324135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Dr01113.1 288 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 324
                **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MWLPNRRHAG QPKCPTLFLS PMAQAQDVII YFETGSEALY AYLVSIAWRG PHPHAPPVRH  60
HFNLGRGNHI TRLSFPLRPL QSRVISRVSC RRPPSRMSES NPPDHELYAH DGAGAAGGGA  120
EKMDVASDMP SDQEHLGEAV DAAMPLMSVT SNQLTLLFQG EVYVFDSVSP EKVQAVLLLL  180
GGCEVPTGIA GMTLPCHQDD KGLDDLLRRT NIPAKRIASL IRFREKRKER CFDKKIRYNV  240
RKEVALRMQR RKGQFAGKAN PQEGASVPST CELAQSSGQD DSLQESKCQN CGISEKMTPA  300
MRRGPAGPRS LCNACGLMWA NKGTLRNLSK VSKMGTPSPA NNTNMLGESI DSDTGDNKPL  360
ILASENQDPV VNPSEIAANG MPGDMQHEGG NELKTKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68GATA family protein