PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00643.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 203aa    MW: 21639.5 Da    PI: 8.3304
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00643.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.71.2e-302102196
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ C l+p++     +++q +++ +v+k+FG++ ++++++a+p  +r+++++sl+yeA+ r+ +Pv+Gavg++++++++l+q+++e++
  Dr00643.1   2 SCNGCRVLRKGCSEACLLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFISAVPAPQRPALFQSLLYEACGRTVNPVSGAVGLLWSGNWHLCQAAVETV 101
                6*********************9999888999****************************************************************9987 PP

     DUF260  96 l 96 
                l
  Dr00643.1 102 L 102
                6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MSCNGCRVLR KGCSEACLLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FISAVPAPQR  60
PALFQSLLYE ACGRTVNPVS GAVGLLWSGN WHLCQAAVET VLRGGVPRPI LDLDPPATPG  120
SDTDQLYANX SLSSPKRRRT EGLGLGLPEG RSRAACDLDL CLTTTMVSER KRPATPSMNS  180
EGSVTTSSES GERGRPSLLN LFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141PKRRRTE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-69LBD family protein