PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00418.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 690aa MW: 73938.8 Da PI: 4.7615

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00418.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.1	3.5e-11	81	117	1	37
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskk 37 rW++qe+laL+++r+em++ +r++ lk+plWee+s + Dr00418.1 81 RWPRQETLALLKIRSEMDSVFRDATLKGPLWEEISFV 117 8*********************************966 PP
2	trihelix	105.7	3.2e-33	420	505	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +e r++++ k+plWee+s+ m + gf+rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Dr00418.1 420 RWPKAEVHALIQLRSGLEYRYQEAGPKGPLWEEISSEMTKLGFNRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 505 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MQQGGGGGGS QYGAPPPPEM PPFGISTTDQ PEAASPISSR PPPNFDELAP AVPGPPFQDD 60 DSLAAAAAVD DTDRGGLPGN RWPRQETLAL LKIRSEMDSV FRDATLKGPL WEEISFVLCT 120 GAGVGAAGAG RAGRQDGKSY RFFSQLEALH SSSGAASSAA NPNPSPPPSI GVLPGLSGTS 180 SRLHTTPISA SPITTAAPAS GVAGIAGISL SSNTSSEDSD DEDTEEMVTG EGRKRKHPHI 240 GQGDSSGGSS STSRKMMAFF EGLMKQVMER QEAMQQKFLE TIEKREQDRM IREEAWKRQE 300 MARLNREHEL MAQERAMAAS RDAAVISFLQ KITGQTISIP TPTTTTTIPA ASAPQMIVTP 360 VSVSVSTPTP QPTTTKPAQQ PLVQNSMEIV RHQVSVSSEL GIVPVQQESH EAMGSSSSSR 420 WPKAEVHALI QLRSGLEYRY QEAGPKGPLW EEISSEMTKL GFNRSSKRCK EKWENINKYF 480 KKVKESNKKR PEDAKTCPYF HQLDALYRRK LAAGGGGGSS SVVSSQALQT ETTSSNPVRQ 540 DNTMQSPQQV PPAMVVPETE GKSDGGGGGG AQIPTSNGGT STTFFEETSS GSVMKKPEDI 600 MKELMEQQQQ QQQHPVVAME DYDKLEEHES DNMDEDDEDD EDEDDGKMQY EIQFQRPNVS 660 ASGASASSGN TTSSTTTATA TAGSYMAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MQQGGGGGGS QYGAPPPPEM PPFGISTTDQ PEAASPISSR PPPNFDELAP AVPGPPFQDD  60
DSLAAAAAVD DTDRGGLPGN RWPRQETLAL LKIRSEMDSV FRDATLKGPL WEEISFVLCT  120
GAGVGAAGAG RAGRQDGKSY RFFSQLEALH SSSGAASSAA NPNPSPPPSI GVLPGLSGTS  180
SRLHTTPISA SPITTAAPAS GVAGIAGISL SSNTSSEDSD DEDTEEMVTG EGRKRKHPHI  240
GQGDSSGGSS STSRKMMAFF EGLMKQVMER QEAMQQKFLE TIEKREQDRM IREEAWKRQE  300
MARLNREHEL MAQERAMAAS RDAAVISFLQ KITGQTISIP TPTTTTTIPA ASAPQMIVTP  360
VSVSVSTPTP QPTTTKPAQQ PLVQNSMEIV RHQVSVSSEL GIVPVQQESH EAMGSSSSSR  420
WPKAEVHALI QLRSGLEYRY QEAGPKGPLW EEISSEMTKL GFNRSSKRCK EKWENINKYF  480
KKVKESNKKR PEDAKTCPYF HQLDALYRRK LAAGGGGGSS SVVSSQALQT ETTSSNPVRQ  540
DNTMQSPQQV PPAMVVPETE GKSDGGGGGG AQIPTSNGGT STTFFEETSS GSVMKKPEDI  600
MKELMEQQQQ QQQHPVVAME DYDKLEEHES DNMDEDDEDD EDEDDGKMQY EIQFQRPNVS  660
ASGASASSGN TTSSTTTATA TAGSYMAMVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	7e-46	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr00418.1