![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028556190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27529.3 Da PI: 9.6331 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.5 | 2.7e-31 | 16 | 65 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifss+g+lyey+ XP_028556190.1 16 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSSRGRLYEYA 65 79***********************************************8 PP | |||||||
2 | K-box | 110.2 | 2.1e-36 | 84 | 179 | 4 | 99 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s++ s +e++a+++ qe++kL+++i nLq+++R+l+Ge L+++sl++L+qLe++Lek+++kiRskKnell+++ie++qk+e elq++n++Lr+k+ XP_028556190.1 84 SNSGSISETNAQYYLQEASKLRQQITNLQNSNRNLMGEALSTMSLRDLKQLETRLEKGINKIRSKKNELLYAEIEYMQKREMELQNDNMYLRNKI 178 4444599***************************************************************************************9 PP K-box 99 e 99 + XP_028556190.1 179 A 179 7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence |
MMEPKEKMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV ALVIFSSRGR 60 LYEYANNSVK GTIERYKKAS ADNSNSGSIS ETNAQYYLQE ASKLRQQITN LQNSNRNLMG 120 EALSTMSLRD LKQLETRLEK GINKIRSKKN ELLYAEIEYM QKREMELQND NMYLRNKIAD 180 NERTQQQQHI NMMPSTSTEY EVMPSFDSRN FLQVNLMDPS HHYSLQQQTA LQLGYI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-113 | MIKC_MADS family protein |