![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028552416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26263.1 Da PI: 8.4374 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.8 | 4e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ienk+nrqvtfskRrng++KKA+ELSvLCdaeva+iifss+gkl+e+ XP_028552416.1 9 KLIENKINRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSSSGKLFEFG 58 569*********************************************95 PP | |||||||
2 | K-box | 79.7 | 7.3e-27 | 86 | 159 | 12 | 85 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + + ++ el+kLk+++e+Lq++qRhllGedL+ L+lk+L++LeqqLe++l+ R++++e++l+q+eel+kk XP_028552416.1 86 EAQTKWFMELSKLKAKYESLQQSQRHLLGEDLDALTLKDLEHLEQQLESALSLGRQRRTEIMLNQMEELKKKLA 159 4567899****************************************************************976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
MGRGRVELKL IENKINRQVT FSKRRNGLMK KAFELSVLCD AEVALIIFSS SGKLFEFGSP 60 DSIAKTLGRY QRYNFTPQEM DPADIEAQTK WFMELSKLKA KYESLQQSQR HLLGEDLDAL 120 TLKDLEHLEQ QLESALSLGR QRRTEIMLNQ MEELKKKLAA EYKPMRSIHR SWRPDAVVAT 180 GALPDHPTHP IVMDTEPTLQ IGYPHYESSE ATIPRNVGAQ NNFMQGWTL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-68 | MIKC_MADS family protein |