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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 371aa MW: 41407.5 Da PI: 10.0293 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.1 | 1.5e-30 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifss+g+lyey+ XP_028551969.1 14 KKIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSSRGRLYEYA 63 68***********************************************8 PP | |||||||
2 | K-box | 108.4 | 8.2e-36 | 82 | 178 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+++ +++++++++qe++kL ++i nLq+++R+l+Ge L++++l++L+qLe++Lek+++kiRskKnell+++ie++qkke elq++n++Lr+k+ XP_028551969.1 82 SNTRtISQTNSQYYEQEASKLHQQITNLQNSNRNLMGEALSTMNLRDLKQLETRLEKGISKIRSKKNELLYNEIEYMQKKEMELQNDNMYLRNKI 176 44445999**************************************************************************************9 PP K-box 99 ee 100 +e XP_028551969.1 177 AE 178 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MERNMKGRGK IEIKKIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSSRGRLY 60 EYANNSVKGT IERYKKASSD HSNTRTISQT NSQYYEQEAS KLHQQITNLQ NSNRNLMGEA 120 LSTMNLRDLK QLETRLEKGI SKIRSKKNEL LYNEIEYMQK KEMELQNDNM YLRNKIAENE 180 RVQQHQMNML PSTRNDCEVM PPFDSRSFLQ VNLLPSNRHH WHQRQSTPPL PTVAASASVS 240 ACEAAAAAAR NHCEAWLSSP TRFPLHPQPP PWSSIARTSA DLRKPSAKTQ ASEAASSPSP 300 ALASTSSPAY PQSPSAPASA STPPSPQPHL LHQSQNPLPF PSSSARYGTT AASAHGETTR 360 AQTPIDPVQP S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-96 | MIKC_MADS family protein |