PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 371aa    MW: 41407.5 Da    PI: 10.0293
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-301463150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifss+g+lyey+
  XP_028551969.1 14 KKIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSSRGRLYEYA 63
                    68***********************************************8 PP

2K-box108.48.2e-36821785100
           K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s+++  +++++++++qe++kL ++i nLq+++R+l+Ge L++++l++L+qLe++Lek+++kiRskKnell+++ie++qkke elq++n++Lr+k+
  XP_028551969.1  82 SNTRtISQTNSQYYEQEASKLHQQITNLQNSNRNLMGEALSTMNLRDLKQLETRLEKGISKIRSKKNELLYNEIEYMQKKEMELQNDNMYLRNKI 176
                     44445999**************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_028551969.1 177 AE 178
                     86 PP

Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MERNMKGRGK IEIKKIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSSRGRLY  60
EYANNSVKGT IERYKKASSD HSNTRTISQT NSQYYEQEAS KLHQQITNLQ NSNRNLMGEA  120
LSTMNLRDLK QLETRLEKGI SKIRSKKNEL LYNEIEYMQK KEMELQNDNM YLRNKIAENE  180
RVQQHQMNML PSTRNDCEVM PPFDSRSFLQ VNLLPSNRHH WHQRQSTPPL PTVAASASVS  240
ACEAAAAAAR NHCEAWLSSP TRFPLHPQPP PWSSIARTSA DLRKPSAKTQ ASEAASSPSP  300
ALASTSSPAY PQSPSAPASA STPPSPQPHL LHQSQNPLPF PSSSARYGTT AASAHGETTR  360
AQTPIDPVQP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-96MIKC_MADS family protein