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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27753.7 Da PI: 6.7498 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.8 | 4.4e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+snrqvtfskRr g+lKKA+EL vL+da++ +i+fs +gkly y XP_028551763.1 9 KRIENTSNRQVTFSKRRGGLLKKAHELAVLTDARIGLIVFSASGKLYQYQ 58 79**********************************************97 PP | |||||||
2 | K-box | 59.3 | 1.6e-20 | 82 | 170 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++l+ e++k++ e++ Lq +++++ GedL+ L++++L+qLe+qLe s+ k+R++Knell +q+e+l +k ++ ++ ++++e XP_028551763.1 82 RNIHQQLHCEITKIRHETDRLQLNLKQITGEDLTGLTVNDLNQLEEQLEFSVGKVRTRKNELLNQQLENLHRKVMFEHQVMMEQQHEIE 170 5668999******************************************************************9888887777777776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MGRGKIAIKR IENTSNRQVT FSKRRGGLLK KAHELAVLTD ARIGLIVFSA SGKLYQYQSP 60 GSSMEEIIDR FLIAENIQFE NRNIHQQLHC EITKIRHETD RLQLNLKQIT GEDLTGLTVN 120 DLNQLEEQLE FSVGKVRTRK NELLNQQLEN LHRKVMFEHQ VMMEQQHEIE EQKEREIREM 180 GFLEPFGQIL DDSRSLLHLG PEIHPFQLQP IQPNLQEAEL HGHRRQLWLK EAVMEVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 6e-40 | MIKC_MADS family protein |