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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26042.7 Da PI: 9.5386 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtf+kRrng+lKKA EL vLCdae+ +i+fs+t++ly+++s XP_028551406.1 10 RIDNTTTRQVTFTKRRNGLLKKARELAVLCDAEIGLIVFSNTDRLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 62.5 | 1.7e-21 | 81 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + +++e++ L++++ nLq++ R+l+G d++ L l++Lq Le+qL+ sl iR+kK+++l+++ +el +k + ++++ +++ kk+ XP_028551406.1 81 HSNSEIQFWRREATCLRQQLYNLQENYRQLMG-DVNGLGLNDLQTLENQLKASLHAIRKKKDQVLIDEAQELIQKVRIMDRKYMDIYKKI 169 678999**************************.69*******************************************999999888887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MGRGKIAIRR IDNTTTRQVT FTKRRNGLLK KARELAVLCD AEIGLIVFSN TDRLYDFAST 60 SMKSVIERYS KIKEDRHLVM HSNSEIQFWR REATCLRQQL YNLQENYRQL MGDVNGLGLN 120 DLQTLENQLK ASLHAIRKKK DQVLIDEAQE LIQKVRIMDR KYMDIYKKIN PYVQENMELH 180 QQVDASARFN GGFTTCGSLS PTSTDLELSP PQQQTSGTQD DVLKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-77 | MIKC_MADS family protein |