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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028550923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 27194.6 Da PI: 8.9734 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98 | 3.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyeys+ XP_028550923.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 111.2 | 1e-36 | 81 | 173 | 8 | 99 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +e + ++++qqe+akL+ +i+ Lq+++Rhl+Ge+L+sL+lkeL+qLe++Le++++++RskK+ell+++ie++qk+e elq++n++Lr+k++ XP_028550923.1 81 SlVEVNSQQYYQQESAKLRHQIQLLQNSNRHLMGEGLSSLTLKELKQLENRLERGITRVRSKKHELLFAEIEYMQKREVELQNDNMYLRAKIN 173 24777889***********************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFST RGRLYEYSNH 60 SIKATIEKYK KACADSSNPG SLVEVNSQQY YQQESAKLRH QIQLLQNSNR HLMGEGLSSL 120 TLKELKQLEN RLERGITRVR SKKHELLFAE IEYMQKREVE LQNDNMYLRA KINDNERAEH 180 ANIVQAGTDF DNLPNFDSRN YYHLNILETA PHYSHHQDQT ALHLGYETKA DHSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-105 | MIKC_MADS family protein |