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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028549016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26268.9 Da PI: 10.0576 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.6 | 2.2e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk++rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gklyeys+ XP_028549016.1 10 RIENKIKRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLYEYST 59 8***********************************************96 PP | |||||||
2 | K-box | 78.1 | 2.2e-26 | 88 | 156 | 14 | 82 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 ++ + ++kLk ++e+Lqr+qR+l+Ge+L++L+ keLq+LeqqLe+slk+iRs+K+++l+eq +++ + XP_028549016.1 88 QADWGLAYSKLKTRVESLQRSQRNLMGEELDTLNNKELQHLEQQLESSLKNIRSRKEKMLKEQKKNMEE 156 56788899*******************************************************999865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MGRGRVQLRR IENKIKRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFSN KGKLYEYSTD 60 SSMDKILERY ESYTYAERAI FSSEADPQAD WGLAYSKLKT RVESLQRSQR NLMGEELDTL 120 NNKELQHLEQ QLESSLKNIR SRKEKMLKEQ KKNMEEIIAK AKAKALAQNA AWEQQNRAPY 180 NSSPHHVMIS DSIATPTSRN CQTRYNAEEA TQGELRLGKG LLPSWMLSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-59 | MIKC_MADS family protein |