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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020700529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28357.5 Da PI: 10.0217 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaevavi+fs++gklye+s+ XP_020700529.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAVIVFSNKGKLYEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 103.4 | 2.9e-34 | 83 | 172 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e++ ++ ++ e+ kLk+++e+Lq++qRhl+Ge+L+sLs+keLq+LeqqLe+s+k+iRs+K++l+l++i+elqkkek l e+nk+L+k++ XP_020700529.1 83 NEANPQADWHLEYHKLKARVESLQKSQRHLMGEQLDSLSIKELQHLEQQLESSMKHIRSRKTQLILDSISELQKKEKILLEQNKTLEKEI 172 56667789*******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVAVIVFSN KGKLYEFSTD 60 SSMEKILERY ERYSYAERAL FSNEANPQAD WHLEYHKLKA RVESLQKSQR HLMGEQLDSL 120 SIKELQHLEQ QLESSMKHIR SRKTQLILDS ISELQKKEKI LLEQNKTLEK EIIAKEKAKA 180 LTQIAPWEKQ NLSQYSSAPL HVISDSVPTP TRTFQARANE EESPQPQLRV GNTLLPPWML 240 SHING |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-83 | MIKC_MADS family protein |