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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020700214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26613.5 Da PI: 10.1944 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.6 | 2.9e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien +nrqvtfskRrng+lKKA EL vLCdae+ +iifsstg+ly++ XP_020700214.1 10 RIENITNRQVTFSKRRNGLLKKARELAVLCDAEIGLIIFSSTGRLYDFT 58 8**********************************************97 PP | |||||||
2 | K-box | 82.5 | 9.3e-28 | 75 | 170 | 3 | 98 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++++ ++++++ +q+e++ L+++++nLq+++R+l+GedL+ Ls+keLq+Le+qLeksl+ i +kK+++l+++++el +k +q+en++L ++ XP_020700214.1 75 DHQQVMHAKSEHKIWQREATSLRQQLHNLQENHRQLMGEDLNGLSIKELQNLENQLEKSLQVIQQKKDQILINETQELNQKIAHMQRENMELYRM 169 45556689999*********************************************************************************998 PP K-box 98 l 98 + XP_020700214.1 170 I 170 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MGRGKIEIRR IENITNRQVT FSKRRNGLLK KARELAVLCD AEIGLIIFSS TGRLYDFTSS 60 SMKSVIGRYN KAKQDHQQVM HAKSEHKIWQ REATSLRQQL HNLQENHRQL MGEDLNGLSI 120 KELQNLENQL EKSLQVIQQK KDQILINETQ ELNQKIAHMQ RENMELYRMI NLCRQENMDL 180 NKKVNATKGF KGGSTSSNSG SPVTIYLELS PPQQKISGMH EDFPTLGLQL L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-76 | MIKC_MADS family protein |