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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020694526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25532.9 Da PI: 5.4727 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.8 | 2.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr+g++KKA+EL +LCdaev +iifsstgkl+ +ss XP_020694526.1 10 KIDNATARQVTFSKRRKGLFKKAQELAILCDAEVGLIIFSSTGKLFQFSS 59 69**********************************************96 PP | |||||||
2 | K-box | 53.3 | 1.2e-18 | 93 | 172 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a+L+k+ +L ++R+l Ge++e+L++++Lq++e+ Le +l+++ +kK++ ++eqi++lq+k +l een +Lr+++ XP_020694526.1 93 DGARLNKQAAELTIQLRNLRGENIENLDIEQLQKIESTLECGLSRVLEKKEQKIVEQINDLQQKGLKLIEENARLRNQIS 172 5689*************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MAREKIKIRK IDNATARQVT FSKRRKGLFK KAQELAILCD AEVGLIIFSS TGKLFQFSSS 60 SMKEIIEKHS LQSKNIPRVD QPSLVLQLDN SDDGARLNKQ AAELTIQLRN LRGENIENLD 120 IEQLQKIEST LECGLSRVLE KKEQKIVEQI NDLQQKGLKL IEENARLRNQ ISALHVETTW 180 ESVAGNTDPE IAENAVIEDG QSSECVSNIS HLGGSQDLNE SADPSLKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 9e-86 | MIKC_MADS family protein |