![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020692239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26475.3 Da PI: 9.3848 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr gilKKA+EL vLCda+v++i+fsstgkl +y+s XP_020692239.1 9 KKIENPTNRQVTYSKRRVGILKKAKELTVLCDAQVSLIMFSSTGKLADYCS 59 68***********************************************96 PP | |||||||
2 | K-box | 79.8 | 6.7e-27 | 72 | 169 | 2 | 99 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 q +g +l++a++e++q+ l+ L++ ++nL++e+R+++Ge+Le +++keL+ Leq Le+sl+ +R++K++++ +q+++ +kk k+++e+ +aL + XP_020692239.1 72 QVVTGMDLWNAQYERMQNTLKHLNEINQNLRKEIRQRKGEELEGMEIKELRGLEQTLEESLRIVRQRKYHVIATQTDTYKKKLKSTRETYRALVH 166 5567889**************************************************************************************99 PP K-box 97 kle 99 +le XP_020692239.1 167 ELE 169 876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence |
MGRGKIEIKK IENPTNRQVT YSKRRVGILK KAKELTVLCD AQVSLIMFSS TGKLADYCSP 60 STDIKGVYER YQVVTGMDLW NAQYERMQNT LKHLNEINQN LRKEIRQRKG EELEGMEIKE 120 LRGLEQTLEE SLRIVRQRKY HVIATQTDTY KKKLKSTRET YRALVHELEM KDDNPNYAFS 180 AENHNRVYEN SIPMVNDCPQ MFSFRVVQPI QPNLLGIGYE SHDLSLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-65 | MIKC_MADS family protein |