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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020687696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25459.7 Da PI: 7.0466 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.5 | 9.8e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvt+skRr gi+KKAeEL vLCda+v++ +fss+gkl y+s XP_020687696.1 9 KKIENPTSRQVTYSKRRVGIMKKAEELTVLCDAQVSLFMFSSSGKLSGYCS 59 68*********************************************9986 PP | |||||||
2 | K-box | 87.4 | 2.8e-29 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+ +g + +ea+++++q+ l++Lk+ ++nLq+e+R+++Ge+Le L+++eL+ Leq+Le+s+k +R++K++++ +q+++ +kk ++++e+ +aL XP_020687696.1 71 YQQVTGIDIWEAEYQRMQNTLRNLKEINDNLQKEIRQRKGENLEGLDVNELRGLEQNLEESIKIVRERKYHVIATQTDTYKKKLRNTREIYTALL 165 78899999************************************************************************************999 PP K-box 96 kkle 99 ++l XP_020687696.1 166 HELH 169 9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MGRGKIEIKK IENPTSRQVT YSKRRVGIMK KAEELTVLCD AQVSLFMFSS SGKLSGYCSP 60 STEIKDIFER YQQVTGIDIW EAEYQRMQNT LRNLKEINDN LQKEIRQRKG ENLEGLDVNE 120 LRGLEQNLEE SIKIVRERKY HVIATQTDTY KKKLRNTREI YTALLHELHE FEDENQRCSF 180 VAEDLSGVYD STISMANQQH SQPNKQKIVY ESHDLSFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-62 | MIKC_MADS family protein |