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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020687155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25726.2 Da PI: 6.8773 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.6 | 9e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeEL +LCdaev +++fs tgkl+++s+ XP_020687155.1 10 KIDNATARQVTFSKRRRGLFKKAEELAILCDAEVGLMVFSATGKLFDFST 59 69**********************************************96 PP | |||||||
2 | K-box | 61 | 4.6e-21 | 92 | 172 | 20 | 100 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ L +++ + +++R++ GedL+ L+l+eLqqLe+ Le++l+++ +kK e +leqi++l+kk +l een++Lr +++e XP_020687155.1 92 SMTILSNQVAEATHQLRNMRGEDLHGLTLQELQQLEKTLETGLSRVTQKKGEQILEQINHLRKKGVQLMEENTRLRYQVAE 172 566788889999999*************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAEELAILCD AEVGLMVFSA TGKLFDFSTS 60 SMKEIIDRYN VHSKDHTAVD VPSLDLQLEN GSMTILSNQV AEATHQLRNM RGEDLHGLTL 120 QELQQLEKTL ETGLSRVTQK KGEQILEQIN HLRKKGVQLM EENTRLRYQV AEMSKMGKQV 180 VVDPENAFHE DGQSSESVTN VTHCGNPYEN DDTSDTCLKL GLSCSGWK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-72 | MIKC_MADS family protein |