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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020679601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24479.3 Da PI: 9.8489 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA+E+SvLCda+v+++ifss gk++ey+s XP_020679601.1 9 KRIENSTNRQVTFSKRRNGIMKKAKEISVLCDAQVSLVIFSSLGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 81.9 | 1.5e-27 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l+ +R+k++++l++ ++ ++ e+e+++ + L+ XP_020679601.1 71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEEALQNGLTGVRDKQMDFLKMLKKNERMLEEENKRLTYLLH 165 899**********************************************************************9988888888888888777777 PP K-box 96 kk 97 ++ XP_020679601.1 166 HQ 167 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAKEISVLCD AQVSLVIFSS LGKMFEYCSP 60 STTLSKMLEK YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE 120 LIPIEEALQN GLTGVRDKQM DFLKMLKKNE RMLEEENKRL TYLLHHQQLA MEGSMRELDI 180 GYHQKDREYA AQMPLTFRVQ PIQPNLQGNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-87 | MIKC_MADS family protein |