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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020679397.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28184.2 Da PI: 8.1993 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e++s XP_020679397.1 9 KMIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGRLFEFCS 59 68***********************************************96 PP | |||||||
2 | K-box | 101.2 | 1.4e-33 | 78 | 173 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s + ++++++ +qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe slk+iRs+K++++l+q+ +l++ke++lqe+n+aLr+kl XP_020679397.1 78 SETVIPSKETQNNYQEYLKLKARVEYLQRSQRNLLGEDLGQLTTKELEQLEHQLEISLKQIRSTKSQFMLDQLCDLKRKEQMLQEANRALRMKLH 172 444478899************************************************************************************97 PP K-box 100 e 100 e XP_020679397.1 173 E 173 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGRGRVELKM IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGRLFEFCSS 60 SSMMKTLERY QKCSYNSSET VIPSKETQNN YQEYLKLKAR VEYLQRSQRN LLGEDLGQLT 120 TKELEQLEHQ LEISLKQIRS TKSQFMLDQL CDLKRKEQML QEANRALRMK LHEDEPEIPL 180 QLSWPGGCSG GNGGGHCDRQ PQSDVFFQPL PCDPSLQIGY SPVCIEQQLN TGSSSHNVNG 240 FLPGWM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-102 | MIKC_MADS family protein |