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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020678484.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28745.9 Da PI: 7.2908 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.8 | 9.4e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdae a+iifss+gklyeys+ XP_020678484.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAELALIIFSSRGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 77.8 | 2.8e-26 | 84 | 173 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + l+q++ Lk +++ Lqr+ hl+Ge+L++Ls+keLqqLe+qLe++lk+iRs+ n+ ll +i+ lq+kek+l e++ L+kk+ XP_020678484.1 84 DSEPQDDLCQDYGYLKGKVDALQRSRSHLMGEKLDNLSIKELQQLEHQLETALKHIRSQTNQQLLHSIDVLQRKEKSLLEQKIVLEKKVI 173 45557789*****************************************************************************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AELALIIFSS RGKLYEYSTD 60 NCIERIIERY ERYSYAEKAH LMNDSEPQDD LCQDYGYLKG KVDALQRSRS HLMGEKLDNL 120 SIKELQQLEH QLETALKHIR SQTNQQLLHS IDVLQRKEKS LLEQKIVLEK KVIESENSIK 180 MLQQMQASEL SHAEASHSSP PTLEATNSLP TMNIGGHTWP AVLLAKMSHF CSDENCPPAS 240 VEDFCLQINI I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-73 | MIKC_MADS family protein |