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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020678473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28170.1 Da PI: 9.0177 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.1 | 3.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+l+e++s XP_020678473.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLFEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 94.7 | 1.5e-31 | 78 | 173 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +++ ++++++ +qe+ kLk+++e Lqr+qR+l+GedL +Ls +eL qLe q+e slk+iRs K++l+l+q+ +l++ke++l e+n+aLr+kl+ XP_020678473.1 78 SESAVPSKDTQNNYQEYLKLKSKVEYLQRSQRNLMGEDLIELSSRELDQLELQIEMSLKQIRSIKTQLMLDQLCDLKRKEQMLYEANRALRRKLQ 172 455588999************************************************************************************98 PP K-box 100 e 100 e XP_020678473.1 173 E 173 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSN RGRLFEFCSS 60 TSMTKTLGRY QKCSYTASES AVPSKDTQNN YQEYLKLKSK VEYLQRSQRN LMGEDLIELS 120 SRELDQLELQ IEMSLKQIRS IKTQLMLDQL CDLKRKEQML YEANRALRRK LQEDGPDIPL 180 ELSWPGGETN GSCERQQPQS DKFFQPLPCS NPSFKIGYSP ICTDEQLNRS SSTHNINGFI 240 SGWM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-94 | MIKC_MADS family protein |