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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020675689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 150aa MW: 17420.1 Da PI: 10.5031 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.6 | 2.6e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev +i+fs+t++ly+++s XP_020675689.1 10 RIDNTTTRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSNTDRLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 49.9 | 1.4e-17 | 78 | 140 | 6 | 69 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + ++++ + +q+e++ L++++ nLq++ R+l+G d++ L lk+Lq Le+qL+ sl+ i +kK XP_020675689.1 78 LVMHSNSEIQFWQREATCLRQQLYNLQENYRQLMG-DVNGLGLKDLQTLENQLKASLQAIHKKK 140 45578999***************************.69***********************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence |
MGRGKIAIRR IDNTTTRQVT FSKRRNGLLK KARELAILCD AEVGLIVFSN TDRLYDFAST 60 SMKSVIERYS KIKEDRQLVM HSNSEIQFWQ REATCLRQQL YNLQENYRQL MGDVNGLGLK 120 DLQTLENQLK ASLQAIHKKK VFRSDTLSHV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-64 | MIKC_MADS family protein |