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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020673470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25771.6 Da PI: 8.3163 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.2 | 4.3e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLC+ae+ +i+fs++gklye+ss XP_020673470.1 10 RIENPTSRQVTFSKRRNGLLKKAFELSVLCEAEIGLIVFSPRGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 70 | 7.7e-24 | 80 | 170 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ +e++ e+++++ + + k+i+ L+ ++R+l+Ge+Les+s +eL++Le qLe+s++k+R +Kn+ll eq+ +l+++e+ l een L+k+ XP_020673470.1 80 SKSTEQNIEQWKKDTDLMSKKIDALEDSKRKLMGENLESCSTEELHELEIQLEQSISKVRGRKNHLLEEQVVQLKERERVLLEENALLQKQ 170 347899********************************************************************************99997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MVRGRTEMRR IENPTSRQVT FSKRRNGLLK KAFELSVLCE AEIGLIVFSP RGKLYEFSSS 60 SMLKTIERYK MNNKEMIINS KSTEQNIEQW KKDTDLMSKK IDALEDSKRK LMGENLESCS 120 TEELHELEIQ LEQSISKVRG RKNHLLEEQV VQLKERERVL LEENALLQKQ EGHTTSLLWK 180 EPLLCLNTSK EVGPQCDNKG MDVETELYVG WPGGGRTQQL LKG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-59 | MIKC_MADS family protein |