![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_020673448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25633.9 Da PI: 9.3246 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr+gi+KKA+EL vLCda+ ++++fsstgk+ ey+s XP_020673448.1 9 KKIENPTNRQVTYSKRRAGIMKKASELTVLCDAQLSLVMFSSTGKFSEYCS 59 68***********************************************96 PP | |||||||
2 | K-box | 91.4 | 1.6e-30 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+ sg +l++a++e++q+ l+ Lk+ ++nL+re+R+++GedL+ L++keL+ Leq+++++lk +R++K++++ +q+++ +kk k+ qe++++L XP_020673448.1 71 YQQVSGINLWSAQYEKMQNTLNHLKEINHNLRREIRQRMGEDLDGLEIKELRGLEQNMDEALKLVRNRKYHVISTQTDTYKKKLKNSQETHRNLL 165 7899999***************************************************************************************9 PP K-box 96 kkle 99 +++e XP_020673448.1 166 REME 169 9876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence |
MGRGKIEIKK IENPTNRQVT YSKRRAGIMK KASELTVLCD AQLSLVMFSS TGKFSEYCSP 60 STDSKSIYDR YQQVSGINLW SAQYEKMQNT LNHLKEINHN LRREIRQRMG EDLDGLEIKE 120 LRGLEQNMDE ALKLVRNRKY HVISTQTDTY KKKLKNSQET HRNLLREMET EHAVYYVDDD 180 PSNYDGALAL GNGASYLYSF RTQPSQPNLQ GMGYGPHDLR LA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-67 | MIKC_MADS family protein |