PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz16g22080.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

M-type_MADS

Protein Properties

Length: 565aa MW: 57406.1 Da PI: 9.5262

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz16g22080.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.6	1.8e-24	33	83	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri +++nrqvtf+kR+ g++KKA ELSvLCd +va++if s gkl+ yss Cz16g22080.t1 33 ERIADERNRQVTFTKRKMGLMKKAMELSVLCDCDVALVIFNSAGKLFQYSS 83 699**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence
MTAHVPANLA RPYDFQGLLS LKLKMGRKKI KIERIADERN RQVTFTKRKM GLMKKAMELS 60 VLCDCDVALV IFNSAGKLFQ YSSTDMDTLL ERYSRAVQEP HERRNNEDLF KIHYAGEKLN 120 AGAVKDDGTD MDGVHMASGR HLRQEHVLTG PGSPTQSADS MSSLSDTSLL NTNTQDILKP 180 LGLLIDNKQF AVSPRSERAY TIITSEFDRL FEQLYQNNEL GLDAGDARTL EDAKKALKTS 240 AVAAATAAAA APSAPVSGVK RGRPAKTQTG PMPPPAAVKK ASVDTTPASQ VAITAGAPAA 300 YGVVASSSGY LAGGIAAGSH QVSLPATHVS QSSTLPVPTT SGSLPTLLPS TIVSSVPSIL 360 SATLPAAVSA ALNGTAVAAG GFTTPPLQHM PSLTSLMTSA ISSSAPAAAA GGHKLQQPGM 420 STAPLTVGGN PLLTFQTSSL VPPRSTPLTM PGQLQPVPAS SSSNIMPAAP GISSVAGTAA 480 MMPQFNVGQY LSTIGQLAPA AGGLSSVGYN QHALTGAAAA GQPGLGGGVT SAGVDTPAAT 540 AAGGNAAGDA TGAGTLPSFG SHQA*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence

MTAHVPANLA RPYDFQGLLS LKLKMGRKKI KIERIADERN RQVTFTKRKM GLMKKAMELS  60
VLCDCDVALV IFNSAGKLFQ YSSTDMDTLL ERYSRAVQEP HERRNNEDLF KIHYAGEKLN  120
AGAVKDDGTD MDGVHMASGR HLRQEHVLTG PGSPTQSADS MSSLSDTSLL NTNTQDILKP  180
LGLLIDNKQF AVSPRSERAY TIITSEFDRL FEQLYQNNEL GLDAGDARTL EDAKKALKTS  240
AVAAATAAAA APSAPVSGVK RGRPAKTQTG PMPPPAAVKK ASVDTTPASQ VAITAGAPAA  300
YGVVASSSGY LAGGIAAGSH QVSLPATHVS QSSTLPVPTT SGSLPTLLPS TIVSSVPSIL  360
SATLPAAVSA ALNGTAVAAG GFTTPPLQHM PSLTSLMTSA ISSSAPAAAA GGHKLQQPGM  420
STAPLTVGGN PLLTFQTSSL VPPRSTPLTM PGQLQPVPAS SSSNIMPAAP GISSVAGTAA  480
MMPQFNVGQY LSTIGQLAPA AGGLSSVGYN QHALTGAAAA GQPGLGGGVT SAGVDTPAAT  540
AAGGNAAGDA TGAGTLPSFG SHQA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.3	1e-24	MIKC_MADS family protein