PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028126569.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 762aa    MW: 85306.3 Da    PI: 6.6866
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028126569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-192883156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le++F+++++p+ ++r++L ++lgL+ +q+k+WFqN+R++ k
  XP_028126569.1 28 KKHYHRHTAYQIQQLEAFFKECPHPDDNQRRQLGRELGLEPKQIKFWFQNKRTQTK 83
                    688999**********************************************9987 PP
2START131.41.1e-412514873205
                     HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
           START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla 77 
                     a +a++el+++ +++ep+W kss       +s  + + l + +   +              ++e +++sgvv+m ++ l+  +ld++ +W   ++
  XP_028126569.1 251 AVSAMDELIRLLQVNEPVWIKSSspvdhdgDSRRSSYLLHRDSY--NklfprsihfksstARMESSKDSGVVPMSAVHLLDMFLDSN-KWVDLFP 342
                     5789*******************9*7776633333333333333..144777778999999**************************.9999998 PP

                     ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE....-TTS--..-TTSEE-EESSEEEEEEE CS
           START  78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd....seqkppe.sssvvRaellpSgiliep 156
                         ka t+ev+++       g lqlm+ ++  lsplv+ R+f+f+Ry+r+ +a +w+ vdvS +      +k p  + s  R+ +lpSg+++++
  XP_028126569.1 343 tivtKARTIEVVDTRmlgdqaGSLQLMYEQMHILSPLVApREFYFLRYCREVEASVWMMVDVSYEydcsKLSKDPDpHGSPLRSWRLPSGCMLQD 437
                     8889**********9***********************99***********************762222233334368999************** PP

                     ECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 157 ksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     k+ng ++vtwvehv++++++  h l+r lv  gla ga +w atl+r  e
  XP_028126569.1 438 KPNGCCEVTWVEHVEVDDKSQtHRLYRDLVCGGLAYGAHRWIATLHRMSE 487
                     ******************9999************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    
MDFVGYGSNN ANGSGEEQEA GSSSRKNKKH YHRHTAYQIQ QLEAFFKECP HPDDNQRRQL  60
GRELGLEPKQ IKFWFQNKRT QTKAQNERAD NNALKVENEK IQCENLAIRE ALKNVICPTC  120
GGPPFVEEER QLDVQKLKMQ NSHLKQEYER MSHLIANSLG KPVAQIQSLS SMDFQSQTNI  180
LGFPASQGIL GGSSSNSIDQ LQHQFQQLDD HIGNSNNNNN STKQQQMQYP LINDYGNNKF  240
EMEKMAMIDT AVSAMDELIR LLQVNEPVWI KSSSPVDHDG DSRRSSYLLH RDSYNKLFPR  300
SIHFKSSTAR MESSKDSGVV PMSAVHLLDM FLDSNKWVDL FPTIVTKART IEVVDTRMLG  360
DQAGSLQLMY EQMHILSPLV APREFYFLRY CREVEASVWM MVDVSYEYDC SKLSKDPDPH  420
GSPLRSWRLP SGCMLQDKPN GCCEVTWVEH VEVDDKSQTH RLYRDLVCGG LAYGAHRWIA  480
TLHRMSERLA YLVGASLPRH ELGGVFDIPE GRKSIMDLSQ RMVKNFWKML SMSGKLDFPH  540
LSELNNSGIR VSVRQNNEIG QPSGMIVSAA SSLWLPLSSE TLFNFFTDEK TRHQWDVLSN  600
GNPVNEIAHV SYGTHPGNCI SIIQSFASND NSILMLQESC IEPMAGSVIV YAPIDFPAIK  660
SAISGDDSTN IPILPSGLII SDDGRPPPPP SPHHHDKAAS TSTGGGGNKR SGGSLLTVVF  720
QILVSNHLHS KQLNMESVAI VNTLVSSTVQ KIKAALDCSN VD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein