PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126366.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GATA

Protein Properties

Length: 391aa MW: 43533 Da PI: 5.3457

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.3	1e-13	209	240	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++C+t kT+ WR g++g+ ++Cn CG+++ XP_028126366.1 209 CAHCHTAKTSKWRTGSEGPLSICNGCGIKFEE 240 ****************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MSEVSRDLGA SAEPNKIGPD YFAFYAREVA ELLSQDEDFL AFSSETSEVA GMMNGDVGEK 60 DATGSNHSGK DNTFSGSLFC NGVGARLSDF KKERLKALLR QSVVTLSQEV DEMLDPVIAI 120 RHIQSQLRYK KSLSNYSATA CDEGDVEQHP HKKIKLSSSI SIPLHASPIG AKSLCVCVRA 180 HMFLQDSGNK GKDADLPENG RSNGVKKNCA HCHTAKTSKW RTGSEGPLSI CNGCGIKFEE 240 EKEPPSINDH NKESCLVSNI GADDEYREVD DDMQFLLEND APKVEAVVKK HSDEVFTMLG 300 HMEQQLEELL DTVLSNCRLM TLSEKQQLRK LIQKLPPRNL DRVVEIIQCN KPFGKYSADE 360 IHVDLEKQDN VTLWRLYYYV KAVDNARELS G

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MSEVSRDLGA SAEPNKIGPD YFAFYAREVA ELLSQDEDFL AFSSETSEVA GMMNGDVGEK  60
DATGSNHSGK DNTFSGSLFC NGVGARLSDF KKERLKALLR QSVVTLSQEV DEMLDPVIAI  120
RHIQSQLRYK KSLSNYSATA CDEGDVEQHP HKKIKLSSSI SIPLHASPIG AKSLCVCVRA  180
HMFLQDSGNK GKDADLPENG RSNGVKKNCA HCHTAKTSKW RTGSEGPLSI CNGCGIKFEE  240
EKEPPSINDH NKESCLVSNI GADDEYREVD DDMQFLLEND APKVEAVVKK HSDEVFTMLG  300
HMEQQLEELL DTVLSNCRLM TLSEKQQLRK LIQKLPPRNL DRVVEIIQCN KPFGKYSADE  360
IHVDLEKQDN VTLWRLYYYV KAVDNARELS G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	2e-10	GATA family protein