PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028126247.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 359aa MW: 40292.4 Da PI: 6.2532

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028126247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.2e-15	21	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+t+++ g + R++k+c++rw +yl XP_028126247.1 21 KGLWSPEEDEKLFNYITRFGVGCWSTVPKLAGfvfliragLQRCGKSCRLRWINYL 76 678***************************************************97 PP
2	Myb_DNA-binding	46.7	7.2e-15	82	125	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_028126247.1 82 RGMFSQQEEDLIISLHEALGNR-WAQIAAQLP-GRTDNEVKNFWNS 125 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MHNKSPMGRQ SCCVVKPKLR KGLWSPEEDE KLFNYITRFG VGCWSTVPKL AGFVFLIRAG 60 LQRCGKSCRL RWINYLRPDL KRGMFSQQEE DLIISLHEAL GNRWAQIAAQ LPGRTDNEVK 120 NFWNSCLKKK LMKQGIDPNT HKALISETEL IKDAKNCSEK HSSLANVSAS TEANQAFPVD 180 STSYYDGGLI TDTTRNQFGT KPIFDPLFLS EFQVSTDPIV YNSNLLTQYQ QNMDLNPNFG 240 FSAMPNLANF DHGNMSEMDF SDNSASQMSS FLFNDVKESS SNSSNVNSHT GFQINNMVEN 300 SAFSWGVENK LGPVFQCQIN GSKSEEMKPS PWPESFGSYP LMSPSEDLAG ASMDIFQQI

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MHNKSPMGRQ SCCVVKPKLR KGLWSPEEDE KLFNYITRFG VGCWSTVPKL AGFVFLIRAG  60
LQRCGKSCRL RWINYLRPDL KRGMFSQQEE DLIISLHEAL GNRWAQIAAQ LPGRTDNEVK  120
NFWNSCLKKK LMKQGIDPNT HKALISETEL IKDAKNCSEK HSSLANVSAS TEANQAFPVD  180
STSYYDGGLI TDTTRNQFGT KPIFDPLFLS EFQVSTDPIV YNSNLLTQYQ QNMDLNPNFG  240
FSAMPNLANF DHGNMSEMDF SDNSASQMSS FLFNDVKESS SNSSNVNSHT GFQINNMVEN  300
SAFSWGVENK LGPVFQCQIN GSKSEEMKPS PWPESFGSYP LMSPSEDLAG ASMDIFQQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	8e-76	MYB family protein