PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028125944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 142aa MW: 15941.2 Da PI: 9.4156 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 187.1 | 9e-58 | 1 | 136 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvir 117 +vsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ ++l++++ +++ + + s+s+ ++ e+ ++e pr+pp +r XP_028125944.1 1 MVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL----------QKLQKQQFSFEDASKDSGSSSKCNKFG-AFESAEHEPPRMPP-VR 83 59********************************999983..........455555555555555555544444443.35778899999999.8* PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_028125944.1 84 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 136 ***************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence |
MVSVPCSSML TIVTVRCGHC ANLLSVNMGA LLQTLPHQDL QKLQKQQFSF EDASKDSGSS 60 SKCNKFGAFE SAEHEPPRMP PVRPPEKRQR VPSAYNRFIK EEIQRIKASN PDISHREAFS 120 TAAKNWAHFP HIHFGLKLDG NQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-50 | YABBY family protein |