PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028125938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 164aa MW: 18325.9 Da PI: 8.3043 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 227.3 | 4.1e-70 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ +se vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+ q+l+ ++ ++l++++ +++ + + s+s+ + XP_028125938.1 2 SLDIASESVCYVHCNFCNTILAVSVPCSSMLTIVTVRCGHCANLLSVNMGALLQTLPHQDL----------QKLQKQQFSFEDASKDSGSSSKCN 86 567899*************************************************999983..........455555555555555555544444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + e+ ++e pr+pp +rPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_028125938.1 87 KFG-AFESAEHEPPRMPP-VRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 158 443.35778899999999.8****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence |
MSLDIASESV CYVHCNFCNT ILAVSVPCSS MLTIVTVRCG HCANLLSVNM GALLQTLPHQ 60 DLQKLQKQQF SFEDASKDSG SSSKCNKFGA FESAEHEPPR MPPVRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL DGNQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-64 | YABBY family protein |