PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125724.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 482aa MW: 52848.9 Da PI: 7.8368

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	6e-17	165	214	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028125724.1 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MLDLNVDVVT EESTCDELEK KKIATRKLLE GDDSVTSNSS VVVNADEAPN NAADEDSNSN 60 MISPFNFDVF SRGKGFGVGN IVAIGDECDR NLAPLLVTRQ LFPVGDSEEI GSGSSSSATS 120 LLRPQWLNLS FPDSGAAAGL KAEKKPQPQQ QPVKKSRRGP RSRSSQYRGV TFYRRTGRWE 180 SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FTIKDYEDDM KEMTNLTKEE 240 FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE 300 PSTYEGEMIS TDANNADGGT SQNLDLNLWI FPPADVPKGN VNVRDIQSHC AACEMPDGKR 360 PKVESSISTP TDGQNTRGLT MASKHPPIRS GIYPSFTPNY EERAIGKSTE ALPSLAFSNW 420 AWQMHSHSVV SPVAPFSTAA SSGFSSPNST AALPATFPPQ NKTAHKLYIP TPTTNISHFY 480 NH

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MLDLNVDVVT EESTCDELEK KKIATRKLLE GDDSVTSNSS VVVNADEAPN NAADEDSNSN  60
MISPFNFDVF SRGKGFGVGN IVAIGDECDR NLAPLLVTRQ LFPVGDSEEI GSGSSSSATS  120
LLRPQWLNLS FPDSGAAAGL KAEKKPQPQQ QPVKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVEADIN FTIKDYEDDM KEMTNLTKEE  240
FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE  300
PSTYEGEMIS TDANNADGGT SQNLDLNLWI FPPADVPKGN VNVRDIQSHC AACEMPDGKR  360
PKVESSISTP TDGQNTRGLT MASKHPPIRS GIYPSFTPNY EERAIGKSTE ALPSLAFSNW  420
AWQMHSHSVV SPVAPFSTAA SSGFSSPNST AALPATFPPQ NKTAHKLYIP TPTTNISHFY  480
NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	8e-87	AP2 family protein