PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125460.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 469aa MW: 53205.7 Da PI: 6.7367

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.7	3.8e-29	101	186	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk++eg+ +r ++ +++++f+qlea XP_028125460.1 101 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDEVSRIMsEENGYQRSGKKCREKFENLYKYYKKTREGKAGR--QDGKHYRFFRQLEA 186 8***********************************8899************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEDQYGMANL RQHHYMNERP HFPPTEDLFS GHRNLTQPHH HHYQMVMLGP HHHHHHEFQS 60 DSVTTTAAAA AAAAAAEPSL NGLEMEGGGG GFGGDGGGTG RWPRQETLTL LEIRSRLDSK 120 FKESNQKGPL WDEVSRIMSE ENGYQRSGKK CREKFENLYK YYKKTREGKA GRQDGKHYRF 180 FRQLEALYGD TRNPVSVSET HLLGNNFQFE NASNIATQPP KLCDSLSLSN SSEFDTSSSD 240 DYDTNAAVLM DNDLAEKKKK RRGRRSWKAK IRDFIELQMS KIMEKQEEFL ENMVKTVECK 300 EQERMSREEE WRKEEVDRIE REHKFWANER AWIKSRDSAI MEALKKLTEK EVKASSLEEV 360 TGAEKLQSLG ENQNENGSET ITNTLKAEEG NKKRKENSRS CYFQSNESTI YNHGGGAGGG 420 GGGYCEINGG DGGSNTGNGM HDSCFRFLVG SSDGDKYLWE NYGVKLNKG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEDQYGMANL RQHHYMNERP HFPPTEDLFS GHRNLTQPHH HHYQMVMLGP HHHHHHEFQS  60
DSVTTTAAAA AAAAAAEPSL NGLEMEGGGG GFGGDGGGTG RWPRQETLTL LEIRSRLDSK  120
FKESNQKGPL WDEVSRIMSE ENGYQRSGKK CREKFENLYK YYKKTREGKA GRQDGKHYRF  180
FRQLEALYGD TRNPVSVSET HLLGNNFQFE NASNIATQPP KLCDSLSLSN SSEFDTSSSD  240
DYDTNAAVLM DNDLAEKKKK RRGRRSWKAK IRDFIELQMS KIMEKQEEFL ENMVKTVECK  300
EQERMSREEE WRKEEVDRIE REHKFWANER AWIKSRDSAI MEALKKLTEK EVKASSLEEV  360
TGAEKLQSLG ENQNENGSET ITNTLKAEEG NKKRKENSRS CYFQSNESTI YNHGGGAGGG  420
GGGYCEINGG DGGSNTGNGM HDSCFRFLVG SSDGDKYLWE NYGVKLNKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	262	KKKKRR
2	257	265	KKKKRRGRR
3	258	263	KKKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-85	Trihelix family protein