PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125296.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GATA

Protein Properties

Length: 547aa MW: 60257.2 Da PI: 7.6073

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.4e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_028125296.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDEFEDY 60 RVSRVKSISI KNKEAKVLKR KQNNDYAVVG RVDPDYNQFS QKGLDEDTSN RSSSGSAISN 120 SESCMQFGSA DASDLTGPAQ SNAWDTTVPS RKRTCFNRPK PSSVEKLAKD LHTILHEQQS 180 SHFSGSSEED LLYESNTPMV SVEIGHGSVL IRHPSSIGRE EDSEASSLSV DNKPHPASEA 240 YSHLTALPVH IDNKGANFPS LEIERIKKPN GQGMQQEQIK RDNAQHEKLQ ISGNYNSLLH 300 YVDLKDIFNF QEFASHLTNE EQKQLLKYLP SIDTARLPDS LKSMFGSPQF KENLSSFQKL 360 LAEGVFDLSL SGVKTEDCRT LKKLALCNFT KSKWVEQYNL LKDVKGKSSN GGSVVPGGPN 420 AIVSGSSTSV KRSRDGQFQN FPGSKTTMKS PKRVMKGSHE HKELMDNDGS CFSPGSQFVL 480 PPPDSSSLML DSFQFMDESS DQDLLLDVPS NNSFPQAELL LPASSRFGGA TLASTSRSSA 540 HPQFGRP

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDEFEDY  60
RVSRVKSISI KNKEAKVLKR KQNNDYAVVG RVDPDYNQFS QKGLDEDTSN RSSSGSAISN  120
SESCMQFGSA DASDLTGPAQ SNAWDTTVPS RKRTCFNRPK PSSVEKLAKD LHTILHEQQS  180
SHFSGSSEED LLYESNTPMV SVEIGHGSVL IRHPSSIGRE EDSEASSLSV DNKPHPASEA  240
YSHLTALPVH IDNKGANFPS LEIERIKKPN GQGMQQEQIK RDNAQHEKLQ ISGNYNSLLH  300
YVDLKDIFNF QEFASHLTNE EQKQLLKYLP SIDTARLPDS LKSMFGSPQF KENLSSFQKL  360
LAEGVFDLSL SGVKTEDCRT LKKLALCNFT KSKWVEQYNL LKDVKGKSSN GGSVVPGGPN  420
AIVSGSSTSV KRSRDGQFQN FPGSKTTMKS PKRVMKGSHE HKELMDNDGS CFSPGSQFVL  480
PPPDSSSLML DSFQFMDESS DQDLLLDVPS NNSFPQAELL LPASSRFGGA TLASTSRSSA  540
HPQFGRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-155	GATA family protein