PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028125022.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 363aa MW: 40014.9 Da PI: 10.4405

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028125022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.8	8e-15	49	133	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ v L+ea++e++ +r+klk+++We+v++ + +++ ++++qCk+k+e+++kry+ + +++ +s++p+ ++ XP_028125022.1 49 EWSEGAVSSLLEAYEERWILRNRAKLKGQDWEDVARCVssraNSTKSPKTQTQCKNKIESMKKRYRSESASSATA----TSSWPLCPRI 133 5*********************************9987777778889999**************9999974....4568887666 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MMMEKEANHP SVVSNSSSNI IIVPKEESPR KPPPVCGGSG GGDRLKRDEW SEGAVSSLLE 60 AYEERWILRN RAKLKGQDWE DVARCVSSRA NSTKSPKTQT QCKNKIESMK KRYRSESASS 120 ATATSSWPLC PRIDLLLRGG IGSGGSGGTI TLPPPPPPSP PAPPTTNPLV LLESSLPPQQ 180 PPVPQLPPPP PPPPPPPRPP PRPPLPLGIV AHNSHGSNGV DQGAKEDGVR TKLSDDMLDK 240 NLAIDTDSST PALYSDKERL LELKLKSKNL KMRMKKRKRR KRRKEGEDRE VGESIRWLAE 300 VVLRSEQAKM DTMKELERIR VEAEAKRGEI DLKRTEIIAK TQLEIARLFS SKAIDSSFRI 360 GKS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MMMEKEANHP SVVSNSSSNI IIVPKEESPR KPPPVCGGSG GGDRLKRDEW SEGAVSSLLE  60
AYEERWILRN RAKLKGQDWE DVARCVSSRA NSTKSPKTQT QCKNKIESMK KRYRSESASS  120
ATATSSWPLC PRIDLLLRGG IGSGGSGGTI TLPPPPPPSP PAPPTTNPLV LLESSLPPQQ  180
PPVPQLPPPP PPPPPPPRPP PRPPLPLGIV AHNSHGSNGV DQGAKEDGVR TKLSDDMLDK  240
NLAIDTDSST PALYSDKERL LELKLKSKNL KMRMKKRKRR KRRKEGEDRE VGESIRWLAE  300
VVLRSEQAKM DTMKELERIR VEAEAKRGEI DLKRTEIIAK TQLEIARLFS SKAIDSSFRI  360
GKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	278	LKMRMKKRK
2	275	280	KKRKRR
3	275	281	KKRKRRK
4	275	282	KKRKRRKR
5	275	283	KKRKRRKRR
6	276	282	KKRKRRK
7	276	284	KKRKRRKRR
8	276	281	KRKRRK
9	277	283	KKRKRRK
10	277	285	RKRRKRRKE
11	278	284	KKRKRRK
12	279	285	RRKRRKE
13	280	286	RRKRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-42	Trihelix family protein