PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124461.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 414aa MW: 45789.3 Da PI: 7.54

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18	6.1e-06	3	46	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ + + ++C+ + +lC +C + H+ H ++p XP_028124461.1 3 KVCEFCMGLRPVIYCKADAAYLCLSCDAKVHSAnalsnrHPRTP 46 68****99*******************6577777787766 PP
2	CCT	22.7	3.6e-09	377	410	4	38
CCT 4 allRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 a+lR+k+K+ + + K+ rY+s Ka+ +sR+Rv+G XP_028124461.1 377 AMLRHKDKKVR-RSGKQNRYASHKARTDSRKRVRG 410 899**9875.5699****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC 60 SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV 120 LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK 180 GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG 240 LGADPHQELN VEYFSSPFPP LENLTLSSTV GNHLQGEPLW QCRSPTQSFQ DASVASSVYI 300 IQSANLDKDI GLFSCEGCSY QIRPSYSSLP PSLTKFGAES NATDYMEGCF SPVIAREESP 360 CNSPELKGSE SNTEGNAMLR HKDKKVRRSG KQNRYASHKA RTDSRKRVRG CSFS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC  60
SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV  120
LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK  180
GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG  240
LGADPHQELN VEYFSSPFPP LENLTLSSTV GNHLQGEPLW QCRSPTQSFQ DASVASSVYI  300
IQSANLDKDI GLFSCEGCSY QIRPSYSSLP PSLTKFGAES NATDYMEGCF SPVIAREESP  360
CNSPELKGSE SNTEGNAMLR HKDKKVRRSG KQNRYASHKA RTDSRKRVRG CSFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-32	CO-like family protein