PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124460.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 465aa MW: 51704.8 Da PI: 6.146

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	7.1e-06	3	46	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ + + ++C+ + +lC +C + H+ H ++p XP_028124460.1 3 KVCEFCMGLRPVIYCKADAAYLCLSCDAKVHSAnalsnrHPRTP 46 68****99*******************6577777787766 PP
2	CCT	22.5	4.1e-09	428	461	4	38
CCT 4 allRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 a+lR+k+K+ + + K+ rY+s Ka+ +sR+Rv+G XP_028124460.1 428 AMLRHKDKKVR-RSGKQNRYASHKARTDSRKRVRG 461 899**9875.5699****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC 60 SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV 120 LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK 180 GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG 240 LGADPHQELN GEPLWQCRSP TQSFQLWSQN MQDLGICEEL ACINDFNIPD VDLTFQNFEE 300 FFGCDQDLTR ALFDDKDMTC SSVNKDTSLN GLDHSHAKEI EDASVASSVY IIQSANLDKD 360 IGLFSCEGCS YQIRPSYSSL PPSLTKFGAE SNATDYMEGC FSPVIAREES PCNSPELKGS 420 ESNTEGNAML RHKDKKVRRS GKQNRYASHK ARTDSRKRVR GCSFS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC  60
SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV  120
LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK  180
GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG  240
LGADPHQELN GEPLWQCRSP TQSFQLWSQN MQDLGICEEL ACINDFNIPD VDLTFQNFEE  300
FFGCDQDLTR ALFDDKDMTC SSVNKDTSLN GLDHSHAKEI EDASVASSVY IIQSANLDKD  360
IGLFSCEGCS YQIRPSYSSL PPSLTKFGAE SNATDYMEGC FSPVIAREES PCNSPELKGS  420
ESNTEGNAML RHKDKKVRRS GKQNRYASHK ARTDSRKRVR GCSFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	6e-32	CO-like family protein