PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028124459.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 490aa MW: 54463.8 Da PI: 5.9883

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028124459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.6e-06	3	46	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ + + ++C+ + +lC +C + H+ H ++p XP_028124459.1 3 KVCEFCMGLRPVIYCKADAAYLCLSCDAKVHSAnalsnrHPRTP 46 68****99*******************6577777787766 PP
2	CCT	22.4	4.4e-09	453	486	4	38
CCT 4 allRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 a+lR+k+K+ + + K+ rY+s Ka+ +sR+Rv+G XP_028124459.1 453 AMLRHKDKKVR-RSGKQNRYASHKARTDSRKRVRG 486 899**9875.5699****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC 60 SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV 120 LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK 180 GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG 240 LGADPHQELN VEYFSSPFPP LENLTLSSTV GNHLQGEPLW QCRSPTQSFQ LWSQNMQDLG 300 ICEELACIND FNIPDVDLTF QNFEEFFGCD QDLTRALFDD KDMTCSSVNK DTSLNGLDHS 360 HAKEIEDASV ASSVYIIQSA NLDKDIGLFS CEGCSYQIRP SYSSLPPSLT KFGAESNATD 420 YMEGCFSPVI AREESPCNSP ELKGSESNTE GNAMLRHKDK KVRRSGKQNR YASHKARTDS 480 RKRVRGCSFS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MDKVCEFCMG LRPVIYCKAD AAYLCLSCDA KVHSANALSN RHPRTPVCEA CRYRPAHVRC  60
SDHRMFMCHG CDCSLHKDSS QHQKQVISSF MGCPSAKDFA VLWGFELNKL ENSTLQNQFV  120
LTSCVSVDTG VKNSNFPRQS MSSPQTGGPS LASQASTVTS ILGAEYEVGL SSQHTEVFNK  180
GKQQQDTCII LQQIFDLERL QLTEGDKNSS LIRGKQTTDI SSSTYDTSWK LDQSFQHSLG  240
LGADPHQELN VEYFSSPFPP LENLTLSSTV GNHLQGEPLW QCRSPTQSFQ LWSQNMQDLG  300
ICEELACIND FNIPDVDLTF QNFEEFFGCD QDLTRALFDD KDMTCSSVNK DTSLNGLDHS  360
HAKEIEDASV ASSVYIIQSA NLDKDIGLFS CEGCSYQIRP SYSSLPPSLT KFGAESNATD  420
YMEGCFSPVI AREESPCNSP ELKGSESNTE GNAMLRHKDK KVRRSGKQNR YASHKARTDS  480
RKRVRGCSFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	5e-32	CO-like family protein