PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028124247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 277aa MW: 31417.2 Da PI: 7.0491 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 79 | 132 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k XP_028124247.1 79 KKRRLNMEQVKALEKSFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 132 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 78 | 168 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlE+dy+ Lkr+++alk++n++L++++++L +el XP_028124247.1 78 EKKRRLNMEQVKALEKSFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLERDYNLLKRKFEALKADNDALQAHNKKLVSEL 168 69*************************************************************************************9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence |
MAFVSAEFMF QPREDNHSPS TSPNILSSCS PQDFHIAGVS SSPAQMRRSM SFSGIGSKCE 60 EMHVDDEMSD DDGSPLGEKK RRLNMEQVKA LEKSFELGNK LEPERKLQLA RALGLQPRQV 120 AIWFQNRRAR WKTKQLERDY NLLKRKFEAL KADNDALQAH NKKLVSELLA LKGRESNGIG 180 PINLNKETEA SWSKGSEKSC DFNLCTTTTH QSTNKHVFLN SSTEAANVAH LLQTSSRSDL 240 QCQKIDQMVP DESFCNMFTG VDDHSGFWPW PEQQHFH |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 127 | 135 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-77 | HD-ZIP family protein |