PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028123594.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 757aa    MW: 82603.4 Da    PI: 6.1872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028123594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-2088143156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  XP_028123594.1  88 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 143
                     678899***********************************************998 PP
2START209.99.8e-662774961206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el ++a+ ++p+W+        +n++e+ ++f+++ +     +++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+t+e
  XP_028123594.1 277 ELAVAAMEELTRMAQIGDPLWMPGIdntYVLNEEEYFRTFPRGIGpkpmgFRSEASRESAVVIMNHTNLVEILMDVN-QWSAVFSgivsRAMTME 370
                     57899*****************999766679***********999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q+lsplvp R+ +fvRy++ + +g+w++vdvS+ds ++ p    ++R++++pSg+li++++ng+skvtw+ehv+
  XP_028123594.1 371 VLSTGvagnynGALQVMTAEFQVLSPLVPtRETYFVRYCKHHVDGTWAVVDVSLDSLRPSP----LARCRRRPSGCLIQEMPNGYSKVTWIEHVE 461
                     ***********************************************************99....6***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+++++lv+sgla+gak+wv++l+rq e+
  XP_028123594.1 462 VDDRGVHNIYKPLVNSGLAFGAKRWVSALDRQSER 496
                     *******************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MPAGIMISAR QMPTLIGTGG PAFGSSSGLT LGQSNLMDGQ LNPLEIAQST AESDVGRMRD  60
DEFDSKSGSD NHEGGSGEDQ DPNSRKRKKR YHRHTQHQIQ EMEAFFKECP HPDDKQRKEL  120
SRELGLEPLQ IKFWFQNKRT QMKMQHERHD NTQLRAENEK LRAENMRYRE ALSNASCPTC  180
GGPTALGEMS FDEHHLRVEN SRLREEIDRI AAIAAKYVGK PVVNYPIVSP PITPRSLELG  240
NFGGQPGIGS TELYGAGDLL RSIGGHTDQA DKQMIVELAV AAMEELTRMA QIGDPLWMPG  300
IDNTYVLNEE EYFRTFPRGI GPKPMGFRSE ASRESAVVIM NHTNLVEILM DVNQWSAVFS  360
GIVSRAMTME VLSTGVAGNY NGALQVMTAE FQVLSPLVPT RETYFVRYCK HHVDGTWAVV  420
DVSLDSLRPS PLARCRRRPS GCLIQEMPNG YSKVTWIEHV EVDDRGVHNI YKPLVNSGLA  480
FGAKRWVSAL DRQSERLASA MATNLPPNDV GNTVITSTEG RRSMLKLAER MVTSFCGGVS  540
ASTSHTWTML SGSGADDVRV MTRKSIDDPG RPPGIVLSAA TSFWLPVPPK RVFDFLRDEH  600
SRNEWDILSN GGVLQEMAHI ANGRETGNSV SLLRVNTISG SQNNMLILQE SCSDPTGSFV  660
IYAPVDVVAM NMVLSGGDPD YVAILPSGFA ILPDGPAGHG GHIGEGGSGG SLLTVAFQIL  720
VDSTPNAKLS LGSVATVNNL IACTVDRIKA SVAGENA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein