PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028123293.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 506aa MW: 55867.5 Da PI: 6.0593

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028123293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.6	4.3e-15	222	281	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_028123293.1 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 281 57*****************666664478446***********************98 PP
2	AP2	49	1.5e-15	324	375	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028123293.1 324 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATQEEAAEAYDIAAIKFRG 375 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MAPENSNWLS FSLSSVEMLN SSSSRSQMLQ STMNLLPFHG ASPSTSTDDS HNYYFLDNLY 60 ANGWENTKPE GLAMAQSIGD SSIFTSFVDS QINQQPSPKL EDFLGGDSTL VRYSDSQTET 120 QDSSLTHIYD QSGSALFADH PDFRTIDGGF QAFSTNSSSE IDDSASVPMT QLTSGDFSGQ 180 CPNSGLSLGG VVNTQRSEKA LISVDSEETC KKMSDTFGQR TSIYRGVTRH RWTGRYEAHL 240 WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV SNYTKELEEM 300 KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATQE 360 EAAEAYDIAA IKFRGVNAVT NFEMNRYDVD TILKSALPIG GAAKRLKLSL EADQKPSLNN 420 LDQQPQCSSN SSSSSIINFT NSSQPLEAIP CGVPFDSTAR YHHDLFHLNS NSAVASDNPG 480 SSSTMVTPMT FLPSAPEFFI WPHQSY

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MAPENSNWLS FSLSSVEMLN SSSSRSQMLQ STMNLLPFHG ASPSTSTDDS HNYYFLDNLY  60
ANGWENTKPE GLAMAQSIGD SSIFTSFVDS QINQQPSPKL EDFLGGDSTL VRYSDSQTET  120
QDSSLTHIYD QSGSALFADH PDFRTIDGGF QAFSTNSSSE IDDSASVPMT QLTSGDFSGQ  180
CPNSGLSLGG VVNTQRSEKA LISVDSEETC KKMSDTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTATTNFPV SNYTKELEEM  300
KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATQE  360
EAAEAYDIAA IKFRGVNAVT NFEMNRYDVD TILKSALPIG GAAKRLKLSL EADQKPSLNN  420
LDQQPQCSSN SSSSSIINFT NSSQPLEAIP CGVPFDSTAR YHHDLFHLNS NSAVASDNPG  480
SSSTMVTPMT FLPSAPEFFI WPHQSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-170	AP2 family protein