PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121845.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 408aa MW: 44031.8 Da PI: 4.938

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.7e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ lC +C + H+ H++ XP_028121845.1 4 ICDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777765 PP
2	zf-B_box	22.6	2.2e-07	46	88	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++++++ C + + lC++C +H+g H+++ XP_028121845.1 46 LVCERCNSQPAFVRCVEESISLCQNCDWLGHSGstsgstHKRQ 88 68*****************************888899999876 PP
3	CCT	61.1	3.7e-21	351	394	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+k RkF+Kk+rY+sRKa+A+ R RvKGrFvk+ XP_028121845.1 351 RSSAVLRYKEKKKARKFDKKVRYASRKARADVRRRVKGRFVKAG 394 8899*************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MGYICDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC 60 VEESISLCQN CDWLGHSGST SGSTHKRQAV NCYSGCPSAS ELSSIWSFVL DIPSVGDSTC 120 ENGRSSMSIT DNSLTNVGGS LQSDDGQDGS VLVEGNDVKN IDKSSVWMGS SSMPQLNIKP 180 QNLEQPLGLA SSTSSKMCCP GTKAPGLCED DGFYEDFNMD EVDLNIENYE ELFGVANPFG 240 NDGIDSLFGV KEMSSADLNS QGYAAEGSSI GLVSAMHPDC STAASADSVM SSKTEQNLCY 300 TRQQSNLSFS GITGESGAGD YQDCGASSML LMGEPSWCSP YPESSCPSSS RSSAVLRYKE 360 KKKARKFDKK VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLSQTRSC

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MGYICDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC  60
VEESISLCQN CDWLGHSGST SGSTHKRQAV NCYSGCPSAS ELSSIWSFVL DIPSVGDSTC  120
ENGRSSMSIT DNSLTNVGGS LQSDDGQDGS VLVEGNDVKN IDKSSVWMGS SSMPQLNIKP  180
QNLEQPLGLA SSTSSKMCCP GTKAPGLCED DGFYEDFNMD EVDLNIENYE ELFGVANPFG  240
NDGIDSLFGV KEMSSADLNS QGYAAEGSSI GLVSAMHPDC STAASADSVM SSKTEQNLCY  300
TRQQSNLSFS GITGESGAGD YQDCGASSML LMGEPSWCSP YPESSCPSSS RSSAVLRYKE  360
KKKARKFDKK VRYASRKARA DVRRRVKGRF VKAGDAYDYD PLSQTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-107	CO-like family protein