PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121733.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 406aa MW: 44608.8 Da PI: 5.0831

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.6	7.8e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_028121733.1 4 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777765 PP
2	zf-B_box	21.2	6.2e-07	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C++++++++ + C + + lC++C +H g H+ XP_028121733.1 46 LVCERCNSQPAFIRCVEERISLCQNCDWLGHTGsteastHK 86 68*****************************7777777777 PP
3	CCT	63	9.4e-22	349	392	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RY eK+ktRkF+Kk+rY+sRKa+A+ R RvKGrFvk+ XP_028121733.1 349 RSSAVMRYMEKKKTRKFDKKVRYASRKARADVRRRVKGRFVKAG 392 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MGYMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFIRC 60 VEERISLCQN CDWLGHTGST EASTHKKQAV NCYSGCPSAA ELSTIWSFVL DIPSVGDSTC 120 EKGMSLMSIT DNSLTNSMDP PQSKDGQDVS VFIEENDVKN IDKSSDWMGS SAMPELRTKR 180 QNVNSTSSKT CCPGTKASDL EEDDKFYEDF NMDEVDLNIE NYEEIFGVAL NDPEQLFGND 240 GIGSLFGVKD MSGADLNRRG TYAAEGSSIG LVKSMQPAIS NPASADSVIS SKTDPNLCFA 300 TQAHSSISFS GLSVESSAAD HQDCGASPMV LMGEPPPWCP ESSFPSTSRS SAVMRYMEKK 360 KTRKFDKKVR YASRKARADV RRRVKGRFVK AGDAYDYDPL NETRSF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MGYMCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFIRC  60
VEERISLCQN CDWLGHTGST EASTHKKQAV NCYSGCPSAA ELSTIWSFVL DIPSVGDSTC  120
EKGMSLMSIT DNSLTNSMDP PQSKDGQDVS VFIEENDVKN IDKSSDWMGS SAMPELRTKR  180
QNVNSTSSKT CCPGTKASDL EEDDKFYEDF NMDEVDLNIE NYEEIFGVAL NDPEQLFGND  240
GIGSLFGVKD MSGADLNRRG TYAAEGSSIG LVKSMQPAIS NPASADSVIS SKTDPNLCFA  300
TQAHSSISFS GLSVESSAAD HQDCGASPMV LMGEPPPWCP ESSFPSTSRS SAVMRYMEKK  360
KTRKFDKKVR YASRKARADV RRRVKGRFVK AGDAYDYDPL NETRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-121	CO-like family protein